TB-Profiler result

Run: ERR4817346
Summary

Run ID: ERR4817346

Sample name:

Date: 01-04-2023 14:56:34

Number of reads: 1421621

Percentage reads mapped: 99.92

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
ccsA 619831 c.-60T>G upstream_gene_variant 0.26
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1475932 n.2275T>C non_coding_transcript_exon_variant 0.1
katG 2155835 p.Ala93Thr missense_variant 0.14
Rv3236c 3612388 c.728delG frameshift_variant 0.12
Rv3236c 3612435 p.Ile228Val missense_variant 0.1