TB-Profiler result

Run: ERR4817385
Summary

Run ID: ERR4817385

Sample name:

Date: 01-04-2023 14:57:45

Number of reads: 815

Percentage reads mapped: 34.8

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoC 762989 c.-381G>C upstream_gene_variant 1.0
rpoC 762995 c.-375G>T upstream_gene_variant 1.0
rpoC 763013 c.-357C>G upstream_gene_variant 1.0
kasA 2518190 p.Ser26Ala missense_variant 1.0
kasA 2518199 p.Ile29Val missense_variant 1.0
kasA 2518220 c.106C>T synonymous_variant 1.0
kasA 2518234 c.120G>A synonymous_variant 1.0