TB-Profiler result

Run: ERR4817430
Summary

Run ID: ERR4817430

Sample name:

Date: 01-04-2023 14:59:23

Number of reads: 1695799

Percentage reads mapped: 99.85

Strain: lineage4.9

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 8744 p.Asp481Glu missense_variant 0.12
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471909 n.64G>C non_coding_transcript_exon_variant 0.17
Rv1979c 2223000 c.165C>A synonymous_variant 0.14
folC 2746299 p.Glu434Lys missense_variant 0.11
fbiB 3642835 p.Gly434Val missense_variant 0.12
embC 4240761 p.Met300Thr missense_variant 0.11
embB 4245815 c.-699C>T upstream_gene_variant 0.11
embA 4245847 p.Ser872Cys missense_variant 0.14