Run ID: ERR4817551
Sample name:
Date: 01-04-2023 15:03:31
Number of reads: 1178293
Percentage reads mapped: 95.6
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
mmpR5 | 779191 | p.Ser68Gly | missense_variant | 0.1 | clofazimine, bedaquiline |
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.78 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6760 | c.-542G>T | upstream_gene_variant | 0.1 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 576751 | p.Lys468Asn | missense_variant | 0.27 |
rpoC | 764375 | p.Ala336Thr | missense_variant | 0.11 |
rpoC | 766956 | p.Glu1196Ala | missense_variant | 0.12 |
rpoC | 766970 | p.Ala1201Ser | missense_variant | 0.12 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471914 | n.69A>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472210 | n.365A>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472214 | n.369C>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472668 | n.825_829delGGGTT | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472675 | n.830_831insAGAC | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472680 | n.835C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472682 | n.837T>C | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472683 | n.838T>G | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472687 | n.842A>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472689 | n.844C>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.6 |
rrs | 1473009 | n.1164T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.6 |
rrs | 1473053 | n.1208T>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473192 | n.1347A>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473201 | n.1356delA | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473205 | n.1360T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474228 | n.571T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474252 | n.595T>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476227 | n.2570C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2156045 | p.Val23Leu | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2715535 | c.-203T>C | upstream_gene_variant | 0.13 |
folC | 2746834 | c.765G>T | synonymous_variant | 0.11 |
pepQ | 2859588 | c.831G>A | synonymous_variant | 0.13 |
thyX | 3067318 | p.Arg210* | stop_gained | 0.17 |
fbiA | 3641129 | p.Ala196Val | missense_variant | 1.0 |
alr | 3841093 | p.Leu110Met | missense_variant | 0.12 |
embC | 4241692 | c.1830C>A | synonymous_variant | 0.15 |
embA | 4245500 | p.Gln756His | missense_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |