Run ID: ERR4817567
Sample name:
Date: 01-04-2023 15:04:00
Number of reads: 1133651
Percentage reads mapped: 99.95
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
ccsA | 619831 | c.-60T>G | upstream_gene_variant | 0.19 |
rpoB | 759620 | c.-187A>C | upstream_gene_variant | 0.19 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474623 | n.966C>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475101 | n.1444T>A | non_coding_transcript_exon_variant | 0.25 |
ahpC | 2726338 | p.Val49Gly | missense_variant | 0.25 |
Rv2752c | 3065906 | p.Leu96Met | missense_variant | 0.11 |