TB-Profiler result

Run: ERR4817750
Summary

Run ID: ERR4817750

Sample name:

Date: 01-04-2023 15:10:19

Number of reads: 1197987

Percentage reads mapped: 99.88

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
mshA 576751 p.Lys468Asn missense_variant 0.22
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1476057 n.2400T>A non_coding_transcript_exon_variant 0.15
rrl 1476152 n.2495T>G non_coding_transcript_exon_variant 0.29
inhA 1674310 p.Val37Leu missense_variant 0.1
rpsA 1833431 c.-111T>G upstream_gene_variant 0.12
PPE35 2170184 p.Met143Ile missense_variant 0.1
pncA 2289899 c.-658C>A upstream_gene_variant 0.17
folC 2747536 c.63G>A synonymous_variant 0.12
embB 4245746 c.-768G>T upstream_gene_variant 0.12