Run ID: ERR4817986
Sample name:
Date: 01-04-2023 15:18:04
Number of reads: 1671026
Percentage reads mapped: 99.95
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
fbiC | 1303940 | c.1012delG | frameshift_variant | 0.12 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471862 | n.17T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473104 | n.1259C>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474260 | n.603A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476186 | n.2529T>G | non_coding_transcript_exon_variant | 1.0 |
PPE35 | 2170150 | p.His155Asp | missense_variant | 0.14 |
kasA | 2518685 | p.Asp191Asn | missense_variant | 0.11 |