Run ID: ERR4818142
Sample name:
Date: 01-04-2023 15:23:29
Number of reads: 1504168
Percentage reads mapped: 99.81
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rpoB | 759615 | c.-192A>C | upstream_gene_variant | 0.17 |
rpoB | 761152 | p.Leu449Gln | missense_variant | 0.1 |
rpoC | 762743 | c.-627G>A | upstream_gene_variant | 0.1 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474790 | n.1133C>A | non_coding_transcript_exon_variant | 0.12 |