Run ID: ERR4818194
Sample name:
Date: 01-04-2023 15:25:16
Number of reads: 715465
Percentage reads mapped: 99.41
Strain: lineage4.3.4.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.4 | Euro-American (LAM) | LAM | RD174 | 1.0 |
lineage4.3.4.1 | Euro-American (LAM) | LAM1;LAM2 | RD174 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8117 | c.816C>T | synonymous_variant | 0.18 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
ccsA | 620748 | c.858T>G | synonymous_variant | 0.24 |
rpoB | 762168 | p.Ala788Thr | missense_variant | 0.18 |
rpoC | 762476 | c.-894C>T | upstream_gene_variant | 0.2 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
rpoC | 766933 | c.3564A>T | synonymous_variant | 0.18 |
rpoC | 767171 | p.Arg1268Cys | missense_variant | 0.11 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rplC | 800754 | c.-55A>T | upstream_gene_variant | 0.15 |
Rv1258c | 1406737 | p.Thr202Ala | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rpsA | 1834468 | c.927A>G | synonymous_variant | 0.1 |
rpsA | 1834489 | c.948T>C | synonymous_variant | 0.11 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102252 | p.Gly264Asp | missense_variant | 0.1 |
ndh | 2102254 | c.789C>T | synonymous_variant | 0.11 |
ndh | 2103225 | c.-183A>C | upstream_gene_variant | 0.16 |
PPE35 | 2170544 | c.69G>A | synonymous_variant | 0.13 |
Rv1979c | 2222854 | p.Ile104Thr | missense_variant | 1.0 |
Rv1979c | 2222979 | c.186G>A | synonymous_variant | 0.11 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv2752c | 3064532 | c.1659delG | frameshift_variant | 0.12 |
Rv2752c | 3064828 | p.Gly455Asp | missense_variant | 0.13 |
thyX | 3067275 | p.Pro224His | missense_variant | 0.14 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
thyA | 3074082 | c.390G>C | synonymous_variant | 0.14 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474143 | p.Trp46Tyr | missense_variant | 0.12 |
fprA | 3474165 | c.159C>G | synonymous_variant | 0.15 |
fprA | 3474366 | c.360G>A | synonymous_variant | 0.15 |
Rv3236c | 3612007 | p.Ala370Thr | missense_variant | 0.11 |
fbiB | 3641283 | c.-252C>T | upstream_gene_variant | 0.11 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
clpC1 | 4038985 | p.Asp574Asn | missense_variant | 0.12 |
clpC1 | 4039025 | c.1680C>T | synonymous_variant | 0.11 |
clpC1 | 4039991 | c.714G>A | synonymous_variant | 1.0 |
embC | 4240921 | c.1059C>T | synonymous_variant | 0.13 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243398 | c.169delC | frameshift_variant | 0.11 |
embA | 4243935 | p.Asp235Asn | missense_variant | 0.13 |
embA | 4244990 | c.1758G>A | synonymous_variant | 0.11 |
embA | 4245386 | c.2154C>T | synonymous_variant | 0.11 |
aftB | 4267406 | p.Lys477His | missense_variant | 0.11 |
aftB | 4267411 | p.Gly476Cys | missense_variant | 0.11 |
aftB | 4267413 | p.Gly475Ala | missense_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |