TB-Profiler result

Run: ERR4818234
Summary

Run ID: ERR4818234

Sample name:

Date: 01-04-2023 15:26:47

Number of reads: 2510031

Percentage reads mapped: 99.93

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472557 n.712G>A non_coding_transcript_exon_variant 0.33
rrs 1472571 n.726G>T non_coding_transcript_exon_variant 0.33
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.33
rrs 1472582 n.737G>T non_coding_transcript_exon_variant 0.33
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.33
rrs 1472585 n.740A>C non_coding_transcript_exon_variant 0.33
rrs 1472623 n.778A>C non_coding_transcript_exon_variant 0.33
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.33
rrl 1475850 n.2193T>G non_coding_transcript_exon_variant 0.2
rrl 1475914 n.2257C>A non_coding_transcript_exon_variant 0.29
rrl 1476519 n.2862C>T non_coding_transcript_exon_variant 0.13