TB-Profiler result

Run: ERR4818289
Summary

Run ID: ERR4818289

Sample name:

Date: 01-04-2023 15:28:34

Number of reads: 911288

Percentage reads mapped: 99.86

Strain: lineage4.9

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6307 c.-995T>C upstream_gene_variant 0.1
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
embC 4242115 c.2253G>A synonymous_variant 0.11
ubiA 4270022 c.-189C>G upstream_gene_variant 0.13
ubiA 4270025 c.-192C>G upstream_gene_variant 0.2