TB-Profiler result

Run: ERR4818375
Summary

Run ID: ERR4818375

Sample name:

Date: 01-04-2023 15:31:26

Number of reads: 1640682

Percentage reads mapped: 99.75

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
fbiC 1304851 p.Gly641Ser missense_variant 0.2
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1473716 n.59T>C non_coding_transcript_exon_variant 0.11
kasA 2518151 p.Ser13Arg missense_variant 0.14
folC 2746619 p.Arg327Leu missense_variant 0.12
folC 2746686 p.Ala305Thr missense_variant 0.15
fbiD 3339312 c.195C>T synonymous_variant 0.11
rpoA 3878578 c.-71C>A upstream_gene_variant 0.4