TB-Profiler result

Run: ERR4818499
Summary

Run ID: ERR4818499

Sample name:

Date: 01-04-2023 15:35:28

Number of reads: 2273

Percentage reads mapped: 16.09

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpsL 781841 c.282C>T synonymous_variant 1.0
rpsL 781857 p.Gly100Cys missense_variant 1.0
rpsL 781865 c.306G>C synonymous_variant 1.0
rpsL 781868 c.309T>C synonymous_variant 1.0
rpsL 781871 c.312G>C synonymous_variant 1.0
rpsL 781892 c.333A>G synonymous_variant 1.0
rpsL 781898 c.339A>T synonymous_variant 1.0
rpsL 781907 c.348T>C synonymous_variant 1.0
rpsL 781913 c.354C>A synonymous_variant 1.0
rpsL 781916 c.357T>C synonymous_variant 1.0
rpsL 781929 p.Gly124Ser missense_variant 1.0
rrs 1472673 n.828T>G non_coding_transcript_exon_variant 1.0
rrs 1472675 n.830T>C non_coding_transcript_exon_variant 1.0
rrs 1472677 n.832C>A non_coding_transcript_exon_variant 1.0
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 1.0
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 1.0
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 1.0
rrs 1472707 n.862A>T non_coding_transcript_exon_variant 1.0
rrl 1473844 n.187C>T non_coding_transcript_exon_variant 1.0
rrl 1473870 n.213G>A non_coding_transcript_exon_variant 1.0
rrl 1473871 n.214T>C non_coding_transcript_exon_variant 1.0
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 1.0
rrl 1473887 n.230T>A non_coding_transcript_exon_variant 1.0
rrl 1473888 n.231T>A non_coding_transcript_exon_variant 1.0
clpC1 4039950 p.Leu252Pro missense_variant 1.0