TB-Profiler result

Run: ERR4819104
Summary

Run ID: ERR4819104

Sample name:

Date: 01-04-2023 15:55:36

Number of reads: 2099537

Percentage reads mapped: 99.95

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1475154 n.1497C>A non_coding_transcript_exon_variant 0.33
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.4
rrl 1476658 n.3001G>T non_coding_transcript_exon_variant 0.11
embC 4240648 c.786C>T synonymous_variant 0.16