TB-Profiler result

Run: ERR4819185
Summary

Run ID: ERR4819185

Sample name:

Date: 01-04-2023 15:58:11

Number of reads: 22975

Percentage reads mapped: 92.48

Strain: lineage4.9

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 0.98
lineage4.9 Euro-American (H37Rv-like) T1 None 0.98
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoB 761705 c.1899C>G synonymous_variant 0.5
rpoC 763884 p.Ala172Val missense_variant 1.0
rpoC 763886 c.517C>A synonymous_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
tlyA 1918237 p.Leu100Met missense_variant 1.0
ndh 2102490 p.Met185Leu missense_variant 1.0
PPE35 2169394 p.Ala407Thr missense_variant 0.67
PPE35 2169397 p.Gly406Ser missense_variant 0.67
ald 3086788 c.-32T>C upstream_gene_variant 1.0