TB-Profiler result

Run: ERR4819367
Summary

Run ID: ERR4819367

Sample name:

Date: 01-04-2023 16:04:11

Number of reads: 979198

Percentage reads mapped: 99.78

Strain: lineage4.9

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
mshA 576750 p.Lys468Thr missense_variant 0.25
fbiC 1304769 c.1839C>A synonymous_variant 0.1
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
Rv3083 3449099 p.Ser199Tyr missense_variant 0.1
embA 4244930 c.1698G>A synonymous_variant 0.11