TB-Profiler result

Run: ERR4819428
Summary

Run ID: ERR4819428

Sample name:

Date: 01-04-2023 16:06:08

Number of reads: 3629

Percentage reads mapped: 53.97

Strain: lineage4.9

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoB 760235 c.429T>C synonymous_variant 1.0
fbiC 1304634 c.1704C>G synonymous_variant 1.0
fbiC 1304640 c.1710A>C synonymous_variant 1.0
fbiC 1304646 c.1716T>C synonymous_variant 1.0
fbiC 1304670 c.1740G>C synonymous_variant 1.0
fbiC 1304671 p.Val581Thr missense_variant 1.0
fbiC 1304675 p.Gly582Asp missense_variant 1.0
fbiC 1304694 c.1764A>G synonymous_variant 1.0
PPE35 2167983 p.Gly877Asp missense_variant 1.0
fbiB 3641564 c.30G>A synonymous_variant 1.0
clpC1 4040517 p.Val63Ala missense_variant 1.0