TB-Profiler result

Run: ERR4819568
Summary

Run ID: ERR4819568

Sample name:

Date: 01-04-2023 16:11:10

Number of reads: 2989459

Percentage reads mapped: 99.94

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
mshA 576751 p.Lys468Asn missense_variant 0.23
rrs 1471659 n.-187C>T upstream_gene_variant 0.99
rrs 1472557 n.712G>A non_coding_transcript_exon_variant 0.13
rrs 1472571 n.726G>T non_coding_transcript_exon_variant 0.12
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.11
rrs 1472582 n.737G>T non_coding_transcript_exon_variant 0.1
rrs 1472623 n.778A>C non_coding_transcript_exon_variant 0.1
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.11
rrl 1474233 n.576C>A non_coding_transcript_exon_variant 0.13
rrl 1474300 n.643C>T non_coding_transcript_exon_variant 0.11
rrl 1475052 n.1395G>T non_coding_transcript_exon_variant 0.5
rrl 1475402 n.1745C>T non_coding_transcript_exon_variant 0.33