TB-Profiler result

Run: ERR4819623
Summary

Run ID: ERR4819623

Sample name:

Date: 01-04-2023 16:12:50

Number of reads: 2236

Percentage reads mapped: 19.22

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 8966 c.1665C>G synonymous_variant 1.0
gyrA 8967 p.Ala556Arg missense_variant 1.0
gyrA 8981 c.1680G>C synonymous_variant 1.0
rpoB 760611 c.805T>C synonymous_variant 1.0
rpoB 760634 c.828T>C synonymous_variant 1.0
rpoB 760646 c.840C>G synonymous_variant 1.0
rpoB 760655 c.849A>G synonymous_variant 1.0
rpoB 760661 c.855A>G synonymous_variant 1.0
rpoB 760670 c.864G>C synonymous_variant 1.0
rpoB 761150 c.1344A>C synonymous_variant 1.0
rpoB 761165 c.1359G>T synonymous_variant 1.0
rpoB 761168 c.1362C>G synonymous_variant 1.0
rpoB 761180 c.1374A>C synonymous_variant 1.0
rpoB 761183 c.1377T>G synonymous_variant 1.0
rpoB 761189 c.1383T>C synonymous_variant 1.0
rpoB 761192 c.1386C>G synonymous_variant 1.0
rpoB 761195 c.1389G>C synonymous_variant 1.0
rpoC 764911 c.1542A>G synonymous_variant 1.0
rpoC 764923 c.1554A>G synonymous_variant 1.0
rpoC 764932 c.1563C>A synonymous_variant 1.0
rpoC 764948 c.1579T>C synonymous_variant 1.0
rpoC 764962 c.1593G>C synonymous_variant 1.0
rpoC 764968 c.1599T>C synonymous_variant 1.0
rpoC 764995 c.1626C>G synonymous_variant 1.0
rpsL 781631 c.72G>C synonymous_variant 1.0
rpsL 781655 c.96T>C synonymous_variant 1.0
rpsL 781658 c.99A>G synonymous_variant 1.0
rpsL 781682 c.123T>C synonymous_variant 1.0
rpsL 781709 c.150G>C synonymous_variant 1.0
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 1.0
inhA 1674762 c.561T>C synonymous_variant 1.0
inhA 1674765 c.564C>T synonymous_variant 1.0
inhA 1674774 c.573A>C synonymous_variant 1.0
inhA 1674780 c.579T>G synonymous_variant 1.0
inhA 1674795 c.594G>C synonymous_variant 1.0
Rv2752c 3066054 c.138T>G synonymous_variant 1.0
Rv2752c 3066066 p.Ile42Val missense_variant 1.0
Rv2752c 3066075 c.117A>T synonymous_variant 1.0
Rv2752c 3066087 c.105A>G synonymous_variant 1.0
Rv2752c 3066090 p.Phe34Leu missense_variant 1.0
Rv2752c 3066093 c.99T>C synonymous_variant 1.0