TB-Profiler result

Run: ERR4819748
Summary

Run ID: ERR4819748

Sample name:

Date: 01-04-2023 16:17:05

Number of reads: 1882609

Percentage reads mapped: 99.94

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472388 n.543T>C non_coding_transcript_exon_variant 0.12
rrl 1474666 n.1009T>C non_coding_transcript_exon_variant 0.22
PPE35 2170048 p.Leu189Val missense_variant 0.1
ahpC 2726341 p.Val50Gly missense_variant 0.17