Run ID: ERR4820022
Sample name:
Date: 01-04-2023 16:26:14
Number of reads: 17801
Percentage reads mapped: 97.25
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 0.99 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpsL | 781932 | c.373T>A | stop_lost&splice_region_variant | 0.67 |
PPE35 | 2168319 | p.Thr765Ile | missense_variant | 1.0 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
clpC1 | 4039645 | p.His354Asp | missense_variant | 1.0 |