TB-Profiler result

Run: ERR4820088

Summary

Run ID: ERR4820088

Sample name:

Date: 01-04-2023 16:28:39

Number of reads: 1067381

Percentage reads mapped: 99.93

Strain: lineage4.9

Drug-resistance: Sensitive


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
mshA 576700 p.Glu451Asp missense_variant 0.12
rpoC 764631 c.1263delT frameshift_variant 0.1
atpE 1460942 c.-103G>A upstream_gene_variant 0.1
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472450 n.605A>T non_coding_transcript_exon_variant 0.14
pncA 2289901 c.-660G>T upstream_gene_variant 0.13
folC 2746331 p.Glu423Gly missense_variant 0.12
embC 4241939 p.Pro693Ser missense_variant 0.1