Run ID: ERR4820131
Sample name:
Date: 01-04-2023 16:30:06
Number of reads: 1732400
Percentage reads mapped: 99.9
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472647 | n.802C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472675 | n.830T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472677 | n.832C>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472682 | n.837T>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472683 | n.838T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472687 | n.842A>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472707 | n.862A>T | non_coding_transcript_exon_variant | 0.17 |