TB-Profiler result

Run: ERR4820185
Summary

Run ID: ERR4820185

Sample name:

Date: 01-04-2023 16:32:04

Number of reads: 3800

Percentage reads mapped: 6.01

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6130 c.891T>C synonymous_variant 1.0
gyrB 6139 c.900G>C synonymous_variant 1.0
gyrB 6150 p.Phe304Tyr missense_variant 1.0
gyrB 6154 c.915C>G synonymous_variant 1.0
rpoC 764746 c.1377G>T synonymous_variant 1.0
rpoC 764749 c.1380G>C synonymous_variant 1.0
rpoC 764758 c.1389C>G synonymous_variant 1.0
rpoC 764764 c.1395T>C synonymous_variant 1.0
rrs 1471932 n.87A>G non_coding_transcript_exon_variant 1.0
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 1.0
rrs 1471938 n.93T>A non_coding_transcript_exon_variant 1.0
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 1.0
rrs 1472225 n.380C>G non_coding_transcript_exon_variant 1.0
rrs 1472240 n.395G>A non_coding_transcript_exon_variant 1.0
rrs 1472251 n.406G>C non_coding_transcript_exon_variant 1.0
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 1.0
rrs 1472596 n.751G>T non_coding_transcript_exon_variant 0.67
rrs 1472598 n.753A>T non_coding_transcript_exon_variant 0.67
rrs 1472614 n.769G>T non_coding_transcript_exon_variant 0.67
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 1.0
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 1.0
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 1.0
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 1.0
rrs 1473164 n.1319C>T non_coding_transcript_exon_variant 1.0
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 1.0
embA 4243460 c.228C>T synonymous_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0