TB-Profiler result

Run: ERR4820268
Summary

Run ID: ERR4820268

Sample name:

Date: 01-04-2023 16:35:01

Number of reads: 554

Percentage reads mapped: 16.2

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoC 763070 c.-300T>C upstream_gene_variant 1.0
rpoC 763076 c.-294C>G upstream_gene_variant 1.0
rpoC 763085 c.-285C>G upstream_gene_variant 1.0
rpoC 763115 c.-255T>C upstream_gene_variant 1.0
kasA 2518768 c.654C>G synonymous_variant 1.0
kasA 2518783 c.669T>C synonymous_variant 1.0
kasA 2518792 c.678C>G synonymous_variant 1.0
kasA 2518795 c.681C>G synonymous_variant 1.0
kasA 2518822 c.708C>G synonymous_variant 1.0
kasA 2518825 c.711T>C synonymous_variant 1.0