TB-Profiler result

Run: ERR4820351
Summary

Run ID: ERR4820351

Sample name:

Date: 01-04-2023 16:37:59

Number of reads: 1330048

Percentage reads mapped: 99.96

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1473189 n.1344C>T non_coding_transcript_exon_variant 0.11
rrs 1473293 n.1448G>T non_coding_transcript_exon_variant 0.11
rrl 1474542 n.885A>T non_coding_transcript_exon_variant 0.22
rrl 1476352 n.2695T>C non_coding_transcript_exon_variant 0.14
Rv1979c 2222342 p.Met275Leu missense_variant 0.1
Rv2752c 3064674 c.1518C>T synonymous_variant 0.11
thyA 3074648 c.-177T>G upstream_gene_variant 0.23