Run ID: ERR4820371
Sample name:
Date: 01-04-2023 16:38:39
Number of reads: 1776177
Percentage reads mapped: 99.9
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rpoB | 759620 | c.-187A>C | upstream_gene_variant | 0.13 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472156 | n.311C>A | non_coding_transcript_exon_variant | 0.12 |
PPE35 | 2170384 | p.Ala77Thr | missense_variant | 0.15 |
kasA | 2518348 | c.234A>T | synonymous_variant | 0.1 |