Run ID: ERR4820472
Sample name:
Date: 01-04-2023 16:42:09
Number of reads: 2344294
Percentage reads mapped: 99.95
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
ccsA | 620748 | c.858T>G | synonymous_variant | 0.2 |
fbiC | 1303016 | p.Val29Gly | missense_variant | 0.19 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472058 | n.213T>C | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472120 | n.275G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1473678 | n.21A>G | non_coding_transcript_exon_variant | 0.14 |