Run ID: ERR4820485
Sample name:
Date: 01-04-2023 16:42:32
Number of reads: 1270350
Percentage reads mapped: 97.71
Strain: lineage4.1.1.3
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.1 | Euro-American (X-type) | X1;X2;X3 | None | 1.0 |
lineage4.1.1.3 | Euro-American (X-type) | X1;X3 | RD193 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.5 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781435 | c.-125G>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472992 | n.1147A>G | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473005 | n.1160C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.3 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2167931 | c.2682C>G | synonymous_variant | 0.1 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embC | 4240548 | p.Leu229Arg | missense_variant | 1.0 |
embC | 4240653 | p.Pro264Leu | missense_variant | 0.11 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4249408 | c.2895G>A | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407798 | c.405G>T | synonymous_variant | 1.0 |