Run ID: ERR4820494
Sample name:
Date: 01-04-2023 16:42:45
Number of reads: 21373
Percentage reads mapped: 31.15
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rpoB | 761097 | c.1291_1293delAGCinsTCG | synonymous_variant | 1.0 |
rpoB | 761102 | c.1296A>G | synonymous_variant | 1.0 |
rpoB | 761133 | c.1327T>C | synonymous_variant | 1.0 |
rrs | 1472075 | n.230A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472078 | n.233C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472102 | n.257G>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472113 | n.268T>C | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472148 | n.303T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472572 | n.727T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474166 | n.509G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474179 | n.522C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474183 | n.526T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474184 | n.527C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474186 | n.529A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474201 | n.544T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474202 | n.545T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474218 | n.561T>A | non_coding_transcript_exon_variant | 1.0 |
rpsA | 1834261 | c.720A>G | synonymous_variant | 1.0 |
rpsA | 1834264 | c.723G>C | synonymous_variant | 1.0 |
rpsA | 1834294 | c.753G>C | synonymous_variant | 1.0 |
rpsA | 1834298 | p.Gln253Glu | missense_variant | 1.0 |
rpsA | 1834303 | c.762T>C | synonymous_variant | 1.0 |
rpsA | 1834306 | c.765T>C | synonymous_variant | 1.0 |
rpsA | 1834327 | c.786G>C | synonymous_variant | 1.0 |
rpsA | 1834330 | c.789C>G | synonymous_variant | 1.0 |
ribD | 2987565 | p.Val243Ile | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |