TB-Profiler result

Run: ERR4820506
Summary

Run ID: ERR4820506

Sample name:

Date: 01-04-2023 16:43:12

Number of reads: 36557

Percentage reads mapped: 97.66

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoC 762668 c.-702C>T upstream_gene_variant 1.0
rpoC 765050 p.Ser561Thr missense_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
PPE35 2168463 p.Pro717His missense_variant 1.0
fbiB 3641551 p.His6Arg missense_variant 1.0