TB-Profiler result

Run: ERR4820538
Summary

Run ID: ERR4820538

Sample name:

Date: 01-04-2023 16:44:17

Number of reads: 1358

Percentage reads mapped: 10.08

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
mmpR5 778049 c.-941G>C upstream_gene_variant 1.0
rrs 1472497 n.652G>A non_coding_transcript_exon_variant 1.0
rrs 1472515 n.670C>T non_coding_transcript_exon_variant 1.0
rrs 1472536 n.691G>A non_coding_transcript_exon_variant 1.0
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 1.0
rrs 1473295 n.1450G>A non_coding_transcript_exon_variant 1.0