Run ID: ERR4820580
Sample name:
Date: 01-04-2023 16:45:30
Number of reads: 52752
Percentage reads mapped: 54.04
Strain: lineage4.9;lineage4.6.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
lineage4.6.2 | Euro-American | T;LAM | RD726 | 0.07 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 8990 | c.1689C>G | synonymous_variant | 1.0 |
gyrA | 8993 | c.1692C>T | synonymous_variant | 1.0 |
gyrA | 8996 | c.1695T>C | synonymous_variant | 1.0 |
gyrA | 8998 | p.Leu566Trp | missense_variant | 1.0 |
gyrA | 9018 | p.Gln573Lys | missense_variant | 1.0 |
gyrA | 9023 | c.1722A>T | synonymous_variant | 1.0 |
gyrA | 9026 | c.1725G>C | synonymous_variant | 1.0 |
gyrA | 9029 | c.1728T>C | synonymous_variant | 1.0 |
gyrA | 9032 | c.1731T>C | synonymous_variant | 1.0 |
gyrA | 9035 | c.1734G>C | synonymous_variant | 1.0 |
gyrA | 9044 | c.1743C>G | synonymous_variant | 1.0 |
gyrA | 9051 | c.1750T>C | synonymous_variant | 1.0 |
gyrA | 9063 | p.Ser588Ala | missense_variant | 1.0 |
gyrA | 9068 | c.1767G>C | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoB | 762507 | p.Leu901Met | missense_variant | 1.0 |
rpoB | 762510 | p.Ala902Pro | missense_variant | 1.0 |
rpoC | 762533 | c.-837T>C | upstream_gene_variant | 1.0 |
rpoC | 762536 | c.-834T>C | upstream_gene_variant | 1.0 |
rpoC | 762537 | c.-833T>C | upstream_gene_variant | 1.0 |
rpoC | 762551 | c.-819C>T | upstream_gene_variant | 1.0 |
rpoB | 763093 | p.Val1096Ala | missense_variant | 1.0 |
rpoC | 763618 | c.249C>T | synonymous_variant | 1.0 |
rpoC | 763633 | c.264T>C | synonymous_variant | 1.0 |
rpoC | 763660 | c.291T>G | synonymous_variant | 1.0 |
rpoC | 763666 | c.297G>C | synonymous_variant | 1.0 |
rpoC | 763669 | c.300C>G | synonymous_variant | 1.0 |
rpoC | 763675 | c.306C>G | synonymous_variant | 1.0 |
rpoC | 764509 | c.1140G>T | synonymous_variant | 0.67 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 1.0 |
rpoC | 764539 | c.1170C>G | synonymous_variant | 1.0 |
rpoC | 764542 | c.1173C>G | synonymous_variant | 1.0 |
rpoC | 764548 | c.1179G>C | synonymous_variant | 1.0 |
rplC | 800967 | c.159C>T | synonymous_variant | 0.67 |
rplC | 800970 | c.162T>C | synonymous_variant | 0.67 |
rplC | 800976 | c.168G>A | synonymous_variant | 0.67 |
rplC | 801004 | p.Leu66Val | missense_variant | 0.67 |
rplC | 801009 | c.201A>C | synonymous_variant | 0.67 |
rplC | 801019 | p.Thr71Ala | missense_variant | 1.0 |
rplC | 801024 | c.216C>G | synonymous_variant | 1.0 |
rplC | 801027 | c.219C>G | synonymous_variant | 1.0 |
rplC | 801030 | c.222C>A | synonymous_variant | 1.0 |
rplC | 801039 | c.231A>G | synonymous_variant | 1.0 |
rplC | 801045 | c.237A>G | synonymous_variant | 1.0 |
rplC | 801046 | p.Tyr80His | missense_variant | 1.0 |
rplC | 801054 | c.246G>C | synonymous_variant | 1.0 |
rplC | 801058 | c.250C>T | synonymous_variant | 1.0 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472382 | n.537G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472623 | n.778A>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472647 | n.802C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472675 | n.830T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472677 | n.832C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472682 | n.837T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472683 | n.838T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472687 | n.842A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472707 | n.862A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472954 | n.1110delC | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472958 | n.1113_1114insC | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473081 | n.1236C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473164 | n.1319C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473226 | n.1381C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474784 | n.1127C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474798 | n.1141C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474803 | n.1146G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102213 | p.Ser277Leu | missense_variant | 1.0 |
ahpC | 2726533 | p.Ile114Thr | missense_variant | 0.67 |
ahpC | 2726540 | c.348C>A | synonymous_variant | 0.67 |
ribD | 2987220 | p.Arg128Cys | missense_variant | 0.5 |
Rv3236c | 3612571 | c.546C>T | synonymous_variant | 1.0 |
fbiB | 3641898 | p.Pro122Thr | missense_variant | 1.0 |
rpoA | 3878698 | c.-191A>G | upstream_gene_variant | 1.0 |
rpoA | 3878701 | c.-194C>G | upstream_gene_variant | 1.0 |
clpC1 | 4039649 | c.1056G>T | synonymous_variant | 0.5 |
clpC1 | 4039652 | c.1053G>T | synonymous_variant | 0.5 |
clpC1 | 4039661 | c.1044T>C | synonymous_variant | 0.5 |
clpC1 | 4039682 | c.1023C>G | synonymous_variant | 0.5 |
embB | 4247694 | p.Ala394Glu | missense_variant | 0.67 |
aftB | 4267799 | c.1037delT | frameshift_variant | 1.0 |