Run ID: ERR4820608
Sample name:
Date: 01-04-2023 16:46:32
Number of reads: 1943788
Percentage reads mapped: 99.83
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
mshA | 576751 | p.Lys468Asn | missense_variant | 0.12 |
ccsA | 619831 | c.-60T>G | upstream_gene_variant | 0.18 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474201 | n.544T>C | non_coding_transcript_exon_variant | 0.25 |
kasA | 2518147 | c.33C>T | synonymous_variant | 0.26 |
folC | 2746745 | p.Val285Gly | missense_variant | 0.24 |