TB-Profiler result

Run: ERR4820705
Summary

Run ID: ERR4820705

Sample name:

Date: 01-04-2023 16:49:48

Number of reads: 412

Percentage reads mapped: 13.28

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
clpC1 4039751 c.954A>G synonymous_variant 1.0
clpC1 4039757 c.948A>G synonymous_variant 1.0
clpC1 4039760 c.945T>C synonymous_variant 1.0
clpC1 4039766 c.939T>C synonymous_variant 1.0
clpC1 4039769 c.936C>T synonymous_variant 1.0
clpC1 4039773 p.Lys311Leu missense_variant 1.0
clpC1 4039778 c.927A>G synonymous_variant 1.0
clpC1 4039811 c.894C>G synonymous_variant 1.0
clpC1 4039817 c.888A>C synonymous_variant 1.0
clpC1 4039820 c.885T>C synonymous_variant 1.0