TB-Profiler result

Run: ERR4820757
Summary

Run ID: ERR4820757

Sample name:

Date: 01-04-2023 16:51:32

Number of reads: 33320

Percentage reads mapped: 86.91

Strain: lineage4.9

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781700 c.141G>C synonymous_variant 0.5
rpsL 781703 c.144G>T synonymous_variant 0.5
rpsL 781715 c.156T>C synonymous_variant 0.5
rpsL 781728 c.169T>C synonymous_variant 0.4
rpsL 781736 c.177T>C synonymous_variant 0.4
rpsL 781742 c.183C>T synonymous_variant 0.4
rpsL 781748 c.189C>G synonymous_variant 0.4
rpsL 781754 c.195G>C synonymous_variant 0.4
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
PPE35 2168186 c.2426delT frameshift_variant 1.0
PPE35 2170234 c.378delT frameshift_variant 1.0
Rv2752c 3065397 c.795G>C synonymous_variant 1.0
Rv2752c 3065400 c.792A>C synonymous_variant 1.0
Rv2752c 3065412 c.780G>A synonymous_variant 1.0
Rv2752c 3065418 c.774A>G synonymous_variant 1.0
Rv2752c 3065421 c.771G>A synonymous_variant 1.0
Rv2752c 3065442 c.750T>C synonymous_variant 1.0
Rv2752c 3065451 c.741G>A synonymous_variant 1.0
rpoA 3877909 p.Asn200Ser missense_variant 1.0
rpoA 3877920 c.588G>C synonymous_variant 1.0
rpoA 3877923 c.585C>T synonymous_variant 1.0
rpoA 3877926 c.582G>C synonymous_variant 1.0
rpoA 3877962 c.546G>T synonymous_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0