TB-Profiler result

Run: ERR4820758
Summary

Run ID: ERR4820758

Sample name:

Date: 01-04-2023 16:52:00

Number of reads: 7027497

Percentage reads mapped: 99.96

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
mshA 576108 p.Ala254Gly missense_variant 0.19
fbiC 1304846 p.Ala639Asp missense_variant 0.12
fbiC 1304855 p.Val642Asp missense_variant 0.12
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1474618 n.961T>C non_coding_transcript_exon_variant 0.18
rrl 1475096 n.1439A>T non_coding_transcript_exon_variant 0.12
rrl 1475453 n.1796T>A non_coding_transcript_exon_variant 0.12