TB-Profiler result

Run: ERR4820765

Summary

Run ID: ERR4820765

Sample name:

Date: 01-04-2023 16:51:51

Number of reads: 1115182

Percentage reads mapped: 99.96

Strain: lineage4.9

Drug-resistance: Sensitive


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoB 762481 p.Ile892Thr missense_variant 0.11
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1475170 n.1513A>T non_coding_transcript_exon_variant 0.67
PPE35 2168185 p.Thr810Ala missense_variant 0.1
PPE35 2170066 p.Ala183Thr missense_variant 0.17
folC 2746628 p.Asp324Val missense_variant 0.12
ddn 3986819 c.-24delC upstream_gene_variant 0.13
ethR 4327697 p.Leu50Arg missense_variant 0.13