Run ID: ERR4820784
Sample name:
Date: 01-04-2023 16:52:32
Number of reads: 739
Percentage reads mapped: 6.51
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rpoC | 764623 | c.1254C>G | synonymous_variant | 1.0 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 1.0 |
rpoC | 764635 | c.1266C>G | synonymous_variant | 0.67 |
rpoC | 764653 | c.1284G>C | synonymous_variant | 1.0 |
rpoC | 764665 | c.1296C>G | synonymous_variant | 0.67 |
rpoC | 764671 | c.1302G>C | synonymous_variant | 0.67 |
rpoC | 764706 | p.Leu446Gln | missense_variant | 1.0 |
rpoC | 764713 | c.1344G>C | synonymous_variant | 1.0 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 1.0 |
clpC1 | 4040066 | c.639G>T | synonymous_variant | 1.0 |