Run ID: ERR4820868
Sample name:
Date: 01-04-2023 16:55:31
Number of reads: 1492894
Percentage reads mapped: 99.95
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472144 | n.299A>G | non_coding_transcript_exon_variant | 0.29 |
tlyA | 1918055 | p.Ala39Glu | missense_variant | 0.25 |
fbiD | 3339384 | c.267C>G | synonymous_variant | 0.13 |
embC | 4241705 | c.1846_1847dupCG | frameshift_variant | 0.12 |