TB-Profiler result

Run: ERR4821064
Summary

Run ID: ERR4821064

Sample name:

Date: 01-04-2023 17:02:27

Number of reads: 117545

Percentage reads mapped: 98.55

Strain:

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.1.2.1 Euro-American (Haarlem) T1;H1 RD182 0.14
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
mshA 575679 p.Asn111Ser missense_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
fbiC 1302811 c.-120G>A upstream_gene_variant 0.4
rrl 1475786 n.2133delC non_coding_transcript_exon_variant 0.5
ndh 2102438 p.Arg202Leu missense_variant 1.0
Rv1979c 2222560 p.Ala202Val missense_variant 0.25
pncA 2289451 c.-210G>A upstream_gene_variant 0.5
alr 3841467 c.-47C>A upstream_gene_variant 0.67
clpC1 4040820 c.-116G>A upstream_gene_variant 1.0
panD 4044325 c.-44C>A upstream_gene_variant 0.29