TB-Profiler result

Run: ERR4821113
Summary

Run ID: ERR4821113

Sample name:

Date: 01-04-2023 17:04:04

Number of reads: 796

Percentage reads mapped: 13.36

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoA 3878322 c.186A>G synonymous_variant 1.0
rpoA 3878331 c.177A>G synonymous_variant 1.0
rpoA 3878334 c.174T>C synonymous_variant 1.0
rpoA 3878337 c.171T>C synonymous_variant 1.0
rpoA 3878340 c.168C>T synonymous_variant 1.0
rpoA 3878346 c.162T>C synonymous_variant 1.0
rpoA 3878364 c.144A>T synonymous_variant 1.0
rpoA 3878367 c.141C>G synonymous_variant 1.0
rpoA 3878376 c.132G>C synonymous_variant 1.0
rpoA 3878385 c.123C>G synonymous_variant 1.0
rpoA 3878388 c.120C>G synonymous_variant 1.0
rpoA 3878391 c.117T>C synonymous_variant 1.0
rpoA 3878415 c.93C>T synonymous_variant 1.0
ubiA 4269308 p.Phe176Val missense_variant 1.0