TB-Profiler result

Run: ERR4821144
Summary

Run ID: ERR4821144

Sample name:

Date: 01-04-2023 17:05:03

Number of reads: 23330

Percentage reads mapped: 99.19

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 0.99
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 7056 p.Gly606Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
rpoC 767109 p.Gly1247Asp missense_variant 0.5
rrl 1475858 n.2201T>C non_coding_transcript_exon_variant 1.0
PPE35 2167973 c.2640A>G synonymous_variant 1.0
Rv2752c 3066198 c.-7C>T upstream_gene_variant 1.0
Rv3236c 3612431 p.Val229Glu missense_variant 0.5