Run ID: ERR4821218
Sample name:
Date: 01-04-2023 17:07:46
Number of reads: 247497
Percentage reads mapped: 99.96
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rpoC | 764073 | p.Ile235Thr | missense_variant | 0.33 |
fbiC | 1303799 | p.Val290Glu | missense_variant | 0.67 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474425 | n.768A>G | non_coding_transcript_exon_variant | 0.1 |
PPE35 | 2169263 | p.Ser450Arg | missense_variant | 0.14 |
Rv1979c | 2222630 | p.Val179Ile | missense_variant | 0.2 |
Rv2752c | 3065939 | p.Asp85His | missense_variant | 0.25 |
thyA | 3074303 | p.Tyr57His | missense_variant | 0.22 |