TB-Profiler result

Run: ERR4821269
Summary

Run ID: ERR4821269

Sample name:

Date: 01-04-2023 17:09:25

Number of reads: 40044

Percentage reads mapped: 96.84

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 0.97
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
fgd1 491542 p.Leu254Met missense_variant 0.67
fgd1 491591 p.Lys270Met missense_variant 0.5
Rv1258c 1406378 c.963C>T synonymous_variant 0.33
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
ald 3087612 p.Val265Met missense_variant 0.67
ald 3087623 c.804C>T synonymous_variant 1.0
rpoA 3877821 c.687C>T synonymous_variant 1.0
clpC1 4040547 p.Gly53Glu missense_variant 1.0
embC 4239990 p.Leu43Pro missense_variant 0.67
embB 4249408 c.2895G>A synonymous_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0