TB-Profiler result

Run: ERR4821511
Summary

Run ID: ERR4821511

Sample name:

Date: 01-04-2023 17:17:50

Number of reads: 2250682

Percentage reads mapped: 99.93

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1473918 n.263dupG non_coding_transcript_exon_variant 0.2
rrl 1476049 n.2392C>A non_coding_transcript_exon_variant 0.25
rpoA 3878567 c.-60C>G upstream_gene_variant 0.18
rpoA 3878569 c.-63_-62insG upstream_gene_variant 0.33
rpoA 3878638 c.-131C>T upstream_gene_variant 0.22