TB-Profiler result

Run: ERR4821522
Summary

Run ID: ERR4821522

Sample name:

Date: 01-04-2023 17:18:04

Number of reads: 437

Percentage reads mapped: 37.54

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
Rv3236c 3612736 c.381T>C synonymous_variant 1.0
Rv3236c 3612757 p.Gly120Ala missense_variant 1.0
Rv3236c 3612760 c.357C>G synonymous_variant 1.0
Rv3236c 3612769 c.348T>C synonymous_variant 1.0
Rv3236c 3612772 c.345T>A synonymous_variant 1.0
clpC1 4040662 c.43C>T synonymous_variant 1.0