TB-Profiler result

Run: ERR4821701
Summary

Run ID: ERR4821701

Sample name:

Date: 01-04-2023 17:24:20

Number of reads: 2321189

Percentage reads mapped: 99.81

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472978 n.1137delG non_coding_transcript_exon_variant 0.11
rrl 1475620 n.1963T>C non_coding_transcript_exon_variant 0.15
rrl 1476229 n.2572C>G non_coding_transcript_exon_variant 0.12
rpoA 3878578 c.-71C>A upstream_gene_variant 0.29