TB-Profiler result

Run: ERR4821714
Summary

Run ID: ERR4821714

Sample name:

Date: 01-04-2023 17:24:45

Number of reads: 2743672

Percentage reads mapped: 99.94

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1475627 n.1970G>A non_coding_transcript_exon_variant 0.17
rrl 1475855 n.2200delC non_coding_transcript_exon_variant 0.14
rrl 1476026 n.2369T>C non_coding_transcript_exon_variant 0.5
ahpC 2726338 p.Val49Gly missense_variant 0.22
rpoA 3878578 c.-71C>A upstream_gene_variant 0.29