TB-Profiler result

Run: ERR4821788
Summary

Run ID: ERR4821788

Sample name:

Date: 01-04-2023 17:27:11

Number of reads: 83977

Percentage reads mapped: 67.43

Strain:

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
rpoC 762434 c.-936T>G upstream_gene_variant 1.0
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 775675 p.Trp936Arg missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
fbiC 1305215 p.Ser762Asn missense_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
pncA 2289047 c.195C>T synonymous_variant 1.0
pepQ 2859624 c.795G>A synonymous_variant 1.0
fbiD 3339619 p.Ala168Thr missense_variant 0.5
embA 4243603 p.Ala124Val missense_variant 0.67
embB 4249483 c.2970C>G synonymous_variant 1.0
aftB 4268099 c.738G>A synonymous_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0